WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A3CR.3a.1 Sequence Name  Y39A3CR.3a.1
Length (nt)  3811   Chromosome Location  III: 1860429-1877886
Chromosome . Primary Identifier  III Chromosome Location . Start  1860429
Chromosome Location . End  1877886 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A3CR.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021444 ttc-7 Y39A3CR.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A3CR.3a Y39A3CR.3a 2916   III: 1860438-1860618

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3CR.3a.1 1860429 1877886 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80303   190   III: 1860429-1860618 Caenorhabditis elegans
Exon80304   158   III: 1861670-1861827 Caenorhabditis elegans
Exon80306   100   III: 1864032-1864131 Caenorhabditis elegans
Exon80307   252   III: 1864312-1864563 Caenorhabditis elegans
Exon80308   256   III: 1865732-1865987 Caenorhabditis elegans
Exon80309   187   III: 1867288-1867474 Caenorhabditis elegans
Exon80312   86   III: 1870253-1870338 Caenorhabditis elegans
Exon80314   317   III: 1870393-1870709 Caenorhabditis elegans
Exon80316   100   III: 1871710-1871809 Caenorhabditis elegans
Exon80318   359   III: 1871919-1872277 Caenorhabditis elegans
Exon80320   312   III: 1873718-1874029 Caenorhabditis elegans
Exon80322   236   III: 1874526-1874761 Caenorhabditis elegans
Exon80324   188   III: 1875983-1876170 Caenorhabditis elegans
Exon80327   1070   III: 1876817-1877886 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3CR.3a.1 1860429 1877886 1

1 Sequence

Length
3811

1 Sequence Ontology Term

Identifier Name Description
transcript