WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53A3.4c.1 Sequence Name  F53A3.4c.1
Length (nt)  4437   Chromosome Location  III: 1905967-1931338
Chromosome . Primary Identifier  III Chromosome Location . Start  1905967
Chromosome Location . End  1931338 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53A3.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004128 pqn-41 F53A3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53A3.4c F53A3.4c 4437   III: 1905967-1906011

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53A3.4c.1 1905967 1931338 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80352   45   III: 1905967-1906011 Caenorhabditis elegans
Exon80356   208   III: 1906060-1906267 Caenorhabditis elegans
Exon80359   582   III: 1906341-1906922 Caenorhabditis elegans
Exon80362   197   III: 1907802-1907998 Caenorhabditis elegans
Exon80365   135   III: 1908187-1908321 Caenorhabditis elegans
Exon80368   159   III: 1909285-1909443 Caenorhabditis elegans
Exon80371   252   III: 1910279-1910530 Caenorhabditis elegans
Exon80374   192   III: 1911127-1911318 Caenorhabditis elegans
Exon80377   207   III: 1912917-1913123 Caenorhabditis elegans
Exon80380   259   III: 1914173-1914431 Caenorhabditis elegans
Exon80383   161   III: 1915463-1915623 Caenorhabditis elegans
Exon80386   488   III: 1915729-1916216 Caenorhabditis elegans
Exon80389   244   III: 1916946-1917189 Caenorhabditis elegans
Exon80392   66   III: 1917239-1917304 Caenorhabditis elegans
Exon80402   273   III: 1927677-1927949 Caenorhabditis elegans
Exon80406   368   III: 1929106-1929473 Caenorhabditis elegans
Exon80416   601   III: 1930738-1931338 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53A3.4c.1 1905967 1931338 1

1 Sequence

Length
4437

1 Sequence Ontology Term

Identifier Name Description
transcript