WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A3B.5d.1 Sequence Name  Y39A3B.5d.1
Length (nt)  1719   Chromosome Location  III: 2009299-2021595
Chromosome . Primary Identifier  III Chromosome Location . Start  2009299
Chromosome Location . End  2021595 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A3B.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021439 ckr-2 Y39A3B.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A3B.5d Y39A3B.5d 1521   III: 2009481-2009543

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3B.5d.1 2009299 2021595 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80575   245   III: 2009299-2009543 Caenorhabditis elegans
Exon80582   109   III: 2010635-2010743 Caenorhabditis elegans
Exon80587   68   III: 2011044-2011111 Caenorhabditis elegans
Exon80591   171   III: 2011261-2011431 Caenorhabditis elegans
Exon80596   91   III: 2012422-2012512 Caenorhabditis elegans
Exon80601   117   III: 2012569-2012685 Caenorhabditis elegans
Exon80606   88   III: 2012738-2012825 Caenorhabditis elegans
Exon80611   142   III: 2013701-2013842 Caenorhabditis elegans
Exon80616   151   III: 2014558-2014708 Caenorhabditis elegans
Exon80621   100   III: 2015131-2015230 Caenorhabditis elegans
Exon80626   160   III: 2015451-2015610 Caenorhabditis elegans
Exon80632   148   III: 2015885-2016032 Caenorhabditis elegans
Exon80637   129   III: 2021467-2021595 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3B.5d.1 2009299 2021595 -1

1 Sequence

Length
1719

1 Sequence Ontology Term

Identifier Name Description
transcript