WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A3B.5a.1 Sequence Name  Y39A3B.5a.1
Length (nt)  2001   Chromosome Location  III: 2009302-2021589
Chromosome . Primary Identifier  III Chromosome Location . Start  2009302
Chromosome Location . End  2021589 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A3B.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021439 ckr-2 Y39A3B.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A3B.5a Y39A3B.5a 1686   III: 2009481-2009543

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3B.5a.1 2009302 2021589 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80613   242   III: 2009302-2009543 Caenorhabditis elegans
Exon80617   109   III: 2010635-2010743 Caenorhabditis elegans
Exon80622   68   III: 2011044-2011111 Caenorhabditis elegans
Exon80626   171   III: 2011261-2011431 Caenorhabditis elegans
Exon80631   91   III: 2012422-2012512 Caenorhabditis elegans
Exon80636   117   III: 2012569-2012685 Caenorhabditis elegans
Exon80641   88   III: 2012738-2012825 Caenorhabditis elegans
Exon80646   433   III: 2013410-2013842 Caenorhabditis elegans
Exon80651   151   III: 2014558-2014708 Caenorhabditis elegans
Exon80656   100   III: 2015131-2015230 Caenorhabditis elegans
Exon80661   160   III: 2015451-2015610 Caenorhabditis elegans
Exon80667   148   III: 2015885-2016032 Caenorhabditis elegans
Exon80672   123   III: 2021467-2021589 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3B.5a.1 2009302 2021589 -1

1 Sequence

Length
2001

1 Sequence Ontology Term

Identifier Name Description
transcript