WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A3B.5b.1 Sequence Name  Y39A3B.5b.1
Length (nt)  1812   Chromosome Location  III: 2009481-2021579
Chromosome . Primary Identifier  III Chromosome Location . Start  2009481
Chromosome Location . End  2021579 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A3B.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021439 ckr-2 Y39A3B.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A3B.5b Y39A3B.5b 1812   III: 2009481-2009543

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3B.5b.1 2009481 2021579 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80616   63   III: 2009481-2009543 Caenorhabditis elegans
Exon80618   109   III: 2010635-2010743 Caenorhabditis elegans
Exon80623   68   III: 2011044-2011111 Caenorhabditis elegans
Exon80627   171   III: 2011261-2011431 Caenorhabditis elegans
Exon80632   91   III: 2012422-2012512 Caenorhabditis elegans
Exon80637   117   III: 2012569-2012685 Caenorhabditis elegans
Exon80642   88   III: 2012738-2012825 Caenorhabditis elegans
Exon80647   433   III: 2013410-2013842 Caenorhabditis elegans
Exon80652   151   III: 2014558-2014708 Caenorhabditis elegans
Exon80657   100   III: 2015131-2015230 Caenorhabditis elegans
Exon80662   160   III: 2015451-2015610 Caenorhabditis elegans
Exon80668   148   III: 2015885-2016032 Caenorhabditis elegans
Exon80671   113   III: 2021467-2021579 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3B.5b.1 2009481 2021579 -1

1 Sequence

Length
1812

1 Sequence Ontology Term

Identifier Name Description
transcript