WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G9A.4b.1 Sequence Name  Y48G9A.4b.1
Length (nt)  3950   Chromosome Location  III: 2124137-2151553
Chromosome . Primary Identifier  III Chromosome Location . Start  2124137
Chromosome Location . End  2151553 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G9A.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021698 frl-1 Y48G9A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G9A.4b Y48G9A.4b 3603   III: 2124142-2124229

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G9A.4b.1 2124137 2151553 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80804   93   III: 2124137-2124229 Caenorhabditis elegans
Exon80805   72   III: 2134475-2134546 Caenorhabditis elegans
Exon80806   170   III: 2134651-2134820 Caenorhabditis elegans
Exon80809   254   III: 2136412-2136665 Caenorhabditis elegans
Exon80811   281   III: 2137304-2137584 Caenorhabditis elegans
Exon80813   181   III: 2138320-2138500 Caenorhabditis elegans
Exon80818   241   III: 2140092-2140332 Caenorhabditis elegans
Exon80820   421   III: 2141364-2141784 Caenorhabditis elegans
Exon80822   260   III: 2143530-2143789 Caenorhabditis elegans
Exon80824   415   III: 2145622-2146036 Caenorhabditis elegans
Exon80826   539   III: 2147433-2147971 Caenorhabditis elegans
Exon80828   357   III: 2148883-2149239 Caenorhabditis elegans
Exon80830   187   III: 2150155-2150341 Caenorhabditis elegans
Exon80831   479   III: 2151075-2151553 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G9A.4b.1 2124137 2151553 1

1 Sequence

Length
3950

1 Sequence Ontology Term

Identifier Name Description
transcript