WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G9A.4a.1 Sequence Name  Y48G9A.4a.1
Length (nt)  3691   Chromosome Location  III: 2134746-2151554
Chromosome . Primary Identifier  III Chromosome Location . Start  2134746
Chromosome Location . End  2151554 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G9A.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021698 frl-1 Y48G9A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G9A.4a Y48G9A.4a 3348   III: 2134746-2134820

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G9A.4a.1 2134746 2151554 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80807   75   III: 2134746-2134820 Caenorhabditis elegans
Exon80808   254   III: 2136412-2136665 Caenorhabditis elegans
Exon80810   281   III: 2137304-2137584 Caenorhabditis elegans
Exon80812   181   III: 2138320-2138500 Caenorhabditis elegans
Exon80817   241   III: 2140092-2140332 Caenorhabditis elegans
Exon80819   421   III: 2141364-2141784 Caenorhabditis elegans
Exon80821   260   III: 2143530-2143789 Caenorhabditis elegans
Exon80823   415   III: 2145622-2146036 Caenorhabditis elegans
Exon80825   539   III: 2147433-2147971 Caenorhabditis elegans
Exon80827   357   III: 2148883-2149239 Caenorhabditis elegans
Exon80829   187   III: 2150155-2150341 Caenorhabditis elegans
Exon80832   480   III: 2151075-2151554 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G9A.4a.1 2134746 2151554 1

1 Sequence

Length
3691

1 Sequence Ontology Term

Identifier Name Description
transcript