WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G9A.3.1 Sequence Name  Y48G9A.3.1
Length (nt)  8158   Chromosome Location  III: 2151945-2197908
Chromosome . Primary Identifier  III Chromosome Location . Start  2151945
Chromosome Location . End  2197908 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G9A.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021697 gcn-1 Y48G9A.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G9A.3 Y48G9A.3 7905   III: 2151984-2152043

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G9A.3.1 2151945 2197908 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80833   99   III: 2151945-2152043 Caenorhabditis elegans
Exon80834   204   III: 2152236-2152439 Caenorhabditis elegans
Exon80835   931   III: 2154219-2155149 Caenorhabditis elegans
Exon80836   165   III: 2156398-2156562 Caenorhabditis elegans
Exon80837   185   III: 2157646-2157830 Caenorhabditis elegans
Exon80839   301   III: 2161721-2162021 Caenorhabditis elegans
Exon80840   271   III: 2163254-2163524 Caenorhabditis elegans
Exon80841   183   III: 2164736-2164918 Caenorhabditis elegans
Exon80842   72   III: 2166329-2166400 Caenorhabditis elegans
Exon80843   189   III: 2166690-2166878 Caenorhabditis elegans
Exon80844   122   III: 2168027-2168148 Caenorhabditis elegans
Exon80857   390   III: 2174578-2174967 Caenorhabditis elegans
Exon80858   342   III: 2176625-2176966 Caenorhabditis elegans
Exon80860   560   III: 2178449-2179008 Caenorhabditis elegans
Exon80861   244   III: 2180725-2180968 Caenorhabditis elegans
Exon80862   239   III: 2182169-2182407 Caenorhabditis elegans
Exon80863   141   III: 2183155-2183295 Caenorhabditis elegans
Exon80864   289   III: 2184284-2184572 Caenorhabditis elegans
Exon80865   403   III: 2185580-2185982 Caenorhabditis elegans
Exon80866   241   III: 2188003-2188243 Caenorhabditis elegans
Exon80867   478   III: 2189303-2189780 Caenorhabditis elegans
Exon80868   223   III: 2190990-2191212 Caenorhabditis elegans
Exon80869   419   III: 2192296-2192714 Caenorhabditis elegans
Exon80870   445   III: 2193417-2193861 Caenorhabditis elegans
Exon80871   227   III: 2194508-2194734 Caenorhabditis elegans
Exon80872   238   III: 2195323-2195560 Caenorhabditis elegans
Exon80873   214   III: 2196569-2196782 Caenorhabditis elegans
Exon80874   343   III: 2197566-2197908 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G9A.3.1 2151945 2197908 1

1 Sequence

Length
8158

1 Sequence Ontology Term

Identifier Name Description
transcript