WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54F10BM.9.1 Sequence Name  Y54F10BM.9.1
Length (nt)  3582   Chromosome Location  III: 2295328-2304927
Chromosome . Primary Identifier  III Chromosome Location . Start  2295328
Chromosome Location . End  2304927 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10BM.9.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021863 Y54F10BM.9 Y54F10BM.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10BM.9 Y54F10BM.9 3429   III: 2295469-2295738

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10BM.9.1 2295328 2304927 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80979   411   III: 2295328-2295738 Caenorhabditis elegans
Exon80982   107   III: 2296720-2296826 Caenorhabditis elegans
Exon80983   152   III: 2296870-2297021 Caenorhabditis elegans
Exon80984   503   III: 2297818-2298320 Caenorhabditis elegans
Exon80985   107   III: 2298376-2298482 Caenorhabditis elegans
Exon80986   140   III: 2298530-2298669 Caenorhabditis elegans
Exon80987   467   III: 2299748-2300214 Caenorhabditis elegans
Exon80988   107   III: 2300267-2300373 Caenorhabditis elegans
Exon80989   140   III: 2301582-2301721 Caenorhabditis elegans
Exon80990   395   III: 2301779-2302173 Caenorhabditis elegans
Exon80992   107   III: 2302230-2302336 Caenorhabditis elegans
Exon80993   140   III: 2302929-2303068 Caenorhabditis elegans
Exon80994   359   III: 2303577-2303935 Caenorhabditis elegans
Exon80995   107   III: 2303986-2304092 Caenorhabditis elegans
Exon80996   140   III: 2304545-2304684 Caenorhabditis elegans
Exon80997   200   III: 2304728-2304927 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10BM.9.1 2295328 2304927 -1

1 Sequence

Length
3582

1 Sequence Ontology Term

Identifier Name Description
transcript