WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54F10BM.2.1 Sequence Name  Y54F10BM.2.1
Length (nt)  3655   Chromosome Location  III: 2314436-2326901
Chromosome . Primary Identifier  III Chromosome Location . Start  2314436
Chromosome Location . End  2326901 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10BM.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021857 iffb-1 Y54F10BM.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10BM.2 Y54F10BM.2 3225   III: 2314475-2314518

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10BM.2.1 2314436 2326901 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81013   83   III: 2314436-2314518 Caenorhabditis elegans
Exon81014   136   III: 2314572-2314707 Caenorhabditis elegans
Exon81015   600   III: 2314755-2315354 Caenorhabditis elegans
Exon81016   729   III: 2316338-2317066 Caenorhabditis elegans
Exon81017   289   III: 2319168-2319456 Caenorhabditis elegans
Exon81018   366   III: 2321139-2321504 Caenorhabditis elegans
Exon81019   616   III: 2323128-2323743 Caenorhabditis elegans
Exon81020   175   III: 2325097-2325271 Caenorhabditis elegans
Exon81021   162   III: 2325739-2325900 Caenorhabditis elegans
Exon81022   499   III: 2326403-2326901 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10BM.2.1 2314436 2326901 1

1 Sequence

Length
3655

1 Sequence Ontology Term

Identifier Name Description
transcript