WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00305994 Gene Name  H04J21.4
Sequence Name  ? H04J21.4 Organism  Caenorhabditis elegans
Automated Description  Is affected by bcf-1; vha-12; and slr-2 based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Ubiquitin-like domain superfamily. Biotype  SO:0001217
Genetic Position  III:± Length (nt)  ? 1179
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00305994

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:H04J21.4.1 H04J21.4.1 298   III: 2367346-2368524
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H04J21.4 H04J21.4 270   III: 2367374-2367476

0 RNAi Result

40 Allele

Public Name
gk962532
gk964281
WBVar01327518
WBVar01540878
WBVar01548509
gk472655
gk436713
gk688037
gk713702
gk861026
gk732216
gk704749
gk424978
WBVar02120994
WBVar02124348
WBVar02122316
WBVar01827165
WBVar01827168
WBVar01827167
WBVar01827166
WBVar02124956
gk957083
gk956123
WBVar01770996
WBVar01770995
WBVar00047263
WBVar00097430
WBVar02049649
WBVar02049650
WBVar00561452

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00305994 2367346 2368524 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_2366279..2367345   1067 III: 2366279-2367345 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in bcf-1(ylf1) comparing to in N2 adult animals. DESeq2 WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
  A complete list of the genes that showed differential expression in a slr-2 mutant strain. P-values were calculated using either t-tests or chi-square tests, where appropriate, using the statistic language R. Pearson correlation coefficients between lin-35 and slr-2 coregulated genes as well as standard errors of mean (or deviation) for all other experiments was calculated using Microsoft Excel. WBPaper00031832:slr-2_regulated
  Transcripts that showed significantly increased expression in vha-12(ok281) comparing to in N2 at L4 larva stage. Fold change > 2, FDR < 0.01 WBPaper00066743:vha-12(ok281)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00305994 2367346 2368524 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1179

1 Sequence Ontology Term