WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00306124 Gene Name  W04B5.9
Sequence Name  ? W04B5.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by sir-2.1 based on microarray studies. Is affected by Acrylamide based on microarray studies. Biotype  SO:0001217
Genetic Position  III:± Length (nt)  ? 5780
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00306124

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:W04B5.9.1 W04B5.9.1 836   III: 2428206-2433985
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W04B5.9 W04B5.9 138   III: 2433278-2433296

7 RNAi Result

WormBase ID
WBRNAi00007362
WBRNAi00054750
WBRNAi00054757
WBRNAi00019585
WBRNAi00019587
WBRNAi00007056
WBRNAi00007122

162 Allele

Public Name
gk962532
gk964281
pkP5316
WBVar01327769
WBVar01327768
WBVar01327770
WBVar01327776
WBVar01327775
WBVar01327774
WBVar01540917
WBVar01540915
WBVar01540916
WBVar02123677
WBVar02120675
WBVar01548613
WBVar01548612
WBVar01548615
WBVar01548614
WBVar01823256
gk710444
gk890018
gk559114
gk398243
gk615493
gk911720
gk937268
gk319955
gk742140
gk680912
gk680913

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00306124 2428206 2433985 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_2433986..2434564   579 III: 2433986-2434564 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Germline-enriched and sex-biased expression profile cluster A. hierarchical clustering [cgc6390]:Cluster_A
  Genes with more than 2 fold increase of expression after 500 mg/l acrylamide treatment comparing with control. Two-sided t-test, p < 0.005. WBPaper00031184:acrylamide_upregulated
  Genes that showed significantly changed expression during aging (ANOVA, p < 0.0001) ANOVA, p < 0.0001. WBPaper00032062:age_regulated_genes
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_21
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_4

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00306124 2428206 2433985 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
5780

1 Sequence Ontology Term