WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54F10AL.2c.1 Sequence Name  Y54F10AL.2c.1
Length (nt)  3882   Chromosome Location  III: 2473869-2486622
Chromosome . Primary Identifier  III Chromosome Location . Start  2473869
Chromosome Location . End  2486622 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10AL.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004884 smg-6 Y54F10AL.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10AL.2c Y54F10AL.2c 3660   III: 2473881-2474240

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AL.2c.1 2473869 2486622 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81310   372   III: 2473869-2474240 Caenorhabditis elegans
Exon81313   156   III: 2475342-2475497 Caenorhabditis elegans
Exon81316   817   III: 2476110-2476926 Caenorhabditis elegans
Exon81318   49   III: 2477605-2477653 Caenorhabditis elegans
Exon81321   91   III: 2478031-2478121 Caenorhabditis elegans
Exon81323   80   III: 2478173-2478252 Caenorhabditis elegans
Exon81325   103   III: 2478312-2478414 Caenorhabditis elegans
Exon81327   255   III: 2478851-2479105 Caenorhabditis elegans
Exon81330   101   III: 2479489-2479589 Caenorhabditis elegans
Exon81333   79   III: 2479961-2480039 Caenorhabditis elegans
Exon81336   201   III: 2481898-2482098 Caenorhabditis elegans
Exon81339   179   III: 2482737-2482915 Caenorhabditis elegans
Exon81341   128   III: 2482993-2483120 Caenorhabditis elegans
Exon81343   518   III: 2483769-2484286 Caenorhabditis elegans
Exon81345   121   III: 2484941-2485061 Caenorhabditis elegans
Exon81347   224   III: 2485451-2485674 Caenorhabditis elegans
Exon81349   408   III: 2486215-2486622 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AL.2c.1 2473869 2486622 1

1 Sequence

Length
3882

1 Sequence Ontology Term

Identifier Name Description
transcript