WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54F10AM.10.1 Sequence Name  Y54F10AM.10.1
Length (nt)  5183   Chromosome Location  III: 2511648-2528689
Chromosome . Primary Identifier  III Chromosome Location . Start  2511648
Chromosome Location . End  2528689 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10AM.10.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004314 rbc-2 Y54F10AM.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10AM.10 Y54F10AM.10 4122   III: 2512648-2512815

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.10.1 2511648 2528689 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81387   1168   III: 2511648-2512815 Caenorhabditis elegans
Exon81388   123   III: 2513366-2513488 Caenorhabditis elegans
Exon81389   457   III: 2514213-2514669 Caenorhabditis elegans
Exon81390   498   III: 2515349-2515846 Caenorhabditis elegans
Exon81391   258   III: 2516742-2516999 Caenorhabditis elegans
Exon81392   92   III: 2517763-2517854 Caenorhabditis elegans
Exon81393   485   III: 2518713-2519197 Caenorhabditis elegans
Exon81394   400   III: 2520208-2520607 Caenorhabditis elegans
Exon81395   194   III: 2522292-2522485 Caenorhabditis elegans
Exon81396   160   III: 2522877-2523036 Caenorhabditis elegans
Exon81397   83   III: 2523089-2523171 Caenorhabditis elegans
Exon81398   199   III: 2524632-2524830 Caenorhabditis elegans
Exon81399   124   III: 2525411-2525534 Caenorhabditis elegans
Exon81400   302   III: 2526366-2526667 Caenorhabditis elegans
Exon81401   210   III: 2527881-2528090 Caenorhabditis elegans
Exon81402   112   III: 2528148-2528259 Caenorhabditis elegans
Exon81403   124   III: 2528310-2528433 Caenorhabditis elegans
Exon81404   194   III: 2528496-2528689 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.10.1 2511648 2528689 -1

1 Sequence

Length
5183

1 Sequence Ontology Term

Identifier Name Description
transcript