WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54F10AM.16a.1 Sequence Name  Y54F10AM.16a.1
Length (nt)  2075   Chromosome Location  III: 2530620-2546420
Chromosome . Primary Identifier  III Chromosome Location . Start  2530620
Chromosome Location . End  2546420 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10AM.16a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00306126 cone-1 Y54F10AM.16 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10AM.16a Y54F10AM.16a 1866   III: 2530620-2530670

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.16a.1 2530620 2546420 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81411   51   III: 2530620-2530670 Caenorhabditis elegans
Exon81413   111   III: 2530714-2530824 Caenorhabditis elegans
Exon81416   127   III: 2533823-2533949 Caenorhabditis elegans
Exon81419   200   III: 2536399-2536598 Caenorhabditis elegans
Exon81422   261   III: 2537186-2537446 Caenorhabditis elegans
Exon81425   308   III: 2538493-2538800 Caenorhabditis elegans
Exon81428   164   III: 2539300-2539463 Caenorhabditis elegans
Exon81435   116   III: 2543753-2543868 Caenorhabditis elegans
Exon81437   284   III: 2544362-2544645 Caenorhabditis elegans
Exon81439   61   III: 2544835-2544895 Caenorhabditis elegans
Exon81441   81   III: 2545352-2545432 Caenorhabditis elegans
Exon81443   311   III: 2546110-2546420 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.16a.1 2530620 2546420 1

1 Sequence

Length
2075

1 Sequence Ontology Term

Identifier Name Description
transcript