WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54F10AM.2a.1 Sequence Name  Y54F10AM.2a.1
Length (nt)  2274   Chromosome Location  III: 2549920-2560668
Chromosome . Primary Identifier  III Chromosome Location . Start  2549920
Chromosome Location . End  2560668 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10AM.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001410 feh-1 Y54F10AM.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10AM.2a Y54F10AM.2a 1998   III: 2549932-2549975

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.2a.1 2549920 2560668 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81445   56   III: 2549920-2549975 Caenorhabditis elegans
Exon81449   115   III: 2550070-2550184 Caenorhabditis elegans
Exon81452   136   III: 2555208-2555343 Caenorhabditis elegans
Exon81458   57   III: 2555877-2555933 Caenorhabditis elegans
Exon81465   378   III: 2556147-2556524 Caenorhabditis elegans
Exon81471   71   III: 2556608-2556678 Caenorhabditis elegans
Exon81478   272   III: 2557623-2557894 Caenorhabditis elegans
Exon81484   186   III: 2558001-2558186 Caenorhabditis elegans
Exon81490   450   III: 2558241-2558690 Caenorhabditis elegans
Exon81499   208   III: 2559269-2559476 Caenorhabditis elegans
Exon81503   345   III: 2560324-2560668 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.2a.1 2549920 2560668 1

1 Sequence

Length
2274

1 Sequence Ontology Term

Identifier Name Description
transcript