WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:Y54F10AM.2d.2 Sequence Name  Y54F10AM.2d.2
Length (nt)  2190   Chromosome Location  III: 2550065-2560640
Chromosome . Primary Identifier  III Chromosome Location . Start  2550065
Chromosome Location . End  2560640 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10AM.2d.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001410 feh-1 Y54F10AM.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10AM.2d Y54F10AM.2d 1590   III: 2555915-2555933

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.2d.2 2550065 2560640 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81447   120   III: 2550065-2550184 Caenorhabditis elegans
Exon81455   136   III: 2555208-2555343 Caenorhabditis elegans
Exon81463   57   III: 2555877-2555933 Caenorhabditis elegans
Exon81470   378   III: 2556147-2556524 Caenorhabditis elegans
Exon81476   71   III: 2556608-2556678 Caenorhabditis elegans
Exon81483   272   III: 2557623-2557894 Caenorhabditis elegans
Exon81489   186   III: 2558001-2558186 Caenorhabditis elegans
Exon81495   450   III: 2558241-2558690 Caenorhabditis elegans
Exon81498   203   III: 2559269-2559471 Caenorhabditis elegans
Exon81502   317   III: 2560324-2560640 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.2d.2 2550065 2560640 1

1 Sequence

Length
2190

1 Sequence Ontology Term

Identifier Name Description
transcript