WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54F10AM.2c.2 Sequence Name  Y54F10AM.2c.2
Length (nt)  2233   Chromosome Location  III: 2550068-2560681
Chromosome . Primary Identifier  III Chromosome Location . Start  2550068
Chromosome Location . End  2560681 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10AM.2c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001410 feh-1 Y54F10AM.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10AM.2c Y54F10AM.2c 1665   III: 2555915-2555933

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.2c.2 2550068 2560681 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81448   117   III: 2550068-2550184 Caenorhabditis elegans
Exon81454   136   III: 2555208-2555343 Caenorhabditis elegans
Exon81461   57   III: 2555877-2555933 Caenorhabditis elegans
Exon81468   378   III: 2556147-2556524 Caenorhabditis elegans
Exon81474   71   III: 2556608-2556678 Caenorhabditis elegans
Exon81481   272   III: 2557623-2557894 Caenorhabditis elegans
Exon81487   186   III: 2558001-2558186 Caenorhabditis elegans
Exon81493   450   III: 2558241-2558690 Caenorhabditis elegans
Exon81501   208   III: 2559269-2559476 Caenorhabditis elegans
Exon81505   358   III: 2560324-2560681 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.2c.2 2550068 2560681 1

1 Sequence

Length
2233

1 Sequence Ontology Term

Identifier Name Description
transcript