WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54F10AM.2d.1 Sequence Name  Y54F10AM.2d.1
Length (nt)  2114   Chromosome Location  III: 2555208-2560684
Chromosome . Primary Identifier  III Chromosome Location . Start  2555208
Chromosome Location . End  2560684 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10AM.2d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001410 feh-1 Y54F10AM.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10AM.2d Y54F10AM.2d 1590   III: 2555915-2555933

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.2d.1 2555208 2560684 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81457   136   III: 2555208-2555343 Caenorhabditis elegans
Exon81462   57   III: 2555877-2555933 Caenorhabditis elegans
Exon81469   378   III: 2556147-2556524 Caenorhabditis elegans
Exon81475   71   III: 2556608-2556678 Caenorhabditis elegans
Exon81482   272   III: 2557623-2557894 Caenorhabditis elegans
Exon81488   186   III: 2558001-2558186 Caenorhabditis elegans
Exon81494   450   III: 2558241-2558690 Caenorhabditis elegans
Exon81497   203   III: 2559269-2559471 Caenorhabditis elegans
Exon81507   361   III: 2560324-2560684 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.2d.1 2555208 2560684 1

1 Sequence

Length
2114

1 Sequence Ontology Term

Identifier Name Description
transcript