WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54F10AM.2b.1 Sequence Name  Y54F10AM.2b.1
Length (nt)  2273   Chromosome Location  III: 2549932-2560684
Chromosome . Primary Identifier  III Chromosome Location . Start  2549932
Chromosome Location . End  2560684 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10AM.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001410 feh-1 Y54F10AM.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10AM.2b Y54F10AM.2b 1923   III: 2549932-2549975

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.2b.1 2549932 2560684 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81483   44   III: 2549932-2549975 Caenorhabditis elegans
Exon81487   115   III: 2550070-2550184 Caenorhabditis elegans
Exon81490   136   III: 2555208-2555343 Caenorhabditis elegans
Exon81496   57   III: 2555877-2555933 Caenorhabditis elegans
Exon81503   378   III: 2556147-2556524 Caenorhabditis elegans
Exon81509   71   III: 2556608-2556678 Caenorhabditis elegans
Exon81516   272   III: 2557623-2557894 Caenorhabditis elegans
Exon81522   186   III: 2558001-2558186 Caenorhabditis elegans
Exon81528   450   III: 2558241-2558690 Caenorhabditis elegans
Exon81533   203   III: 2559269-2559471 Caenorhabditis elegans
Exon81543   361   III: 2560324-2560684 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10AM.2b.1 2549932 2560684 1

1 Sequence

Length
2273

1 Sequence Ontology Term

Identifier Name Description
transcript