WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71H2AM.15b.1 Sequence Name  Y71H2AM.15b.1
Length (nt)  2609   Chromosome Location  III: 2747127-2756360
Chromosome . Primary Identifier  III Chromosome Location . Start  2747127
Chromosome Location . End  2756360 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71H2AM.15b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022180 gldi-9 Y71H2AM.15 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71H2AM.15b Y71H2AM.15b 2499   III: 2747237-2747991

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71H2AM.15b.1 2747127 2756360 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81820   865   III: 2747127-2747991 Caenorhabditis elegans
Exon81824   131   III: 2748584-2748714 Caenorhabditis elegans
Exon81828   185   III: 2748926-2749110 Caenorhabditis elegans
Exon81832   162   III: 2749160-2749321 Caenorhabditis elegans
Exon81834   121   III: 2750015-2750135 Caenorhabditis elegans
Exon81838   579   III: 2750659-2751237 Caenorhabditis elegans
Exon81842   131   III: 2751503-2751633 Caenorhabditis elegans
Exon81846   82   III: 2751681-2751762 Caenorhabditis elegans
Exon81850   97   III: 2751909-2752005 Caenorhabditis elegans
Exon81856   108   III: 2755200-2755307 Caenorhabditis elegans
Exon81858   88   III: 2755613-2755700 Caenorhabditis elegans
Exon81860   60   III: 2756301-2756360 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71H2AM.15b.1 2747127 2756360 -1

1 Sequence

Length
2609

1 Sequence Ontology Term

Identifier Name Description
transcript