WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71H2AM.15d.1 Sequence Name  Y71H2AM.15d.1
Length (nt)  2337   Chromosome Location  III: 2747237-2756360
Chromosome . Primary Identifier  III Chromosome Location . Start  2747237
Chromosome Location . End  2756360 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71H2AM.15d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022180 gldi-9 Y71H2AM.15 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71H2AM.15d Y71H2AM.15d 2337   III: 2747237-2747991

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71H2AM.15d.1 2747237 2756360 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81822   755   III: 2747237-2747991 Caenorhabditis elegans
Exon81826   131   III: 2748584-2748714 Caenorhabditis elegans
Exon81830   185   III: 2748926-2749110 Caenorhabditis elegans
Exon81836   121   III: 2750015-2750135 Caenorhabditis elegans
Exon81840   579   III: 2750659-2751237 Caenorhabditis elegans
Exon81844   131   III: 2751503-2751633 Caenorhabditis elegans
Exon81848   82   III: 2751681-2751762 Caenorhabditis elegans
Exon81852   97   III: 2751909-2752005 Caenorhabditis elegans
Exon81857   108   III: 2755200-2755307 Caenorhabditis elegans
Exon81859   88   III: 2755613-2755700 Caenorhabditis elegans
Exon81861   60   III: 2756301-2756360 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71H2AM.15d.1 2747237 2756360 -1

1 Sequence

Length
2337

1 Sequence Ontology Term

Identifier Name Description
transcript