WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55D5A.5e.1 Sequence Name  Y55D5A.5e.1
Length (nt)  5313   Chromosome Location  III: 2995919-3019606
Chromosome . Primary Identifier  III Chromosome Location . Start  2995919
Chromosome Location . End  3019606 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55D5A.5e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000898 daf-2 Y55D5A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55D5A.5e Y55D5A.5e 5313   III: 2995919-2996014

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55D5A.5e.1 2995919 3019606 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon82206   96   III: 2995919-2996014 Caenorhabditis elegans
Exon82212   276   III: 2997060-2997335 Caenorhabditis elegans
Exon82219   186   III: 2998662-2998847 Caenorhabditis elegans
Exon82227   1531   III: 2999852-3001382 Caenorhabditis elegans
Exon82233   335   III: 3004566-3004900 Caenorhabditis elegans
Exon82239   346   III: 3005692-3006037 Caenorhabditis elegans
Exon82246   283   III: 3008610-3008892 Caenorhabditis elegans
Exon82253   113   III: 3010411-3010523 Caenorhabditis elegans
Exon82258   1393   III: 3012186-3013578 Caenorhabditis elegans
Exon82263   169   III: 3014588-3014756 Caenorhabditis elegans
Exon82268   106   III: 3015363-3015468 Caenorhabditis elegans
Exon82273   177   III: 3016166-3016342 Caenorhabditis elegans
Exon82278   122   III: 3016921-3017042 Caenorhabditis elegans
Exon82283   132   III: 3019170-3019301 Caenorhabditis elegans
Exon82285   48   III: 3019559-3019606 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55D5A.5e.1 2995919 3019606 -1

1 Sequence

Length
5313

1 Sequence Ontology Term

Identifier Name Description
transcript