WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y53G8AL.1.1 Sequence Name  Y53G8AL.1.1
Length (nt)  3460   Chromosome Location  III: 3233102-3241375
Chromosome . Primary Identifier  III Chromosome Location . Start  3233102
Chromosome Location . End  3241375 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y53G8AL.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021799 Y53G8AL.1 Y53G8AL.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y53G8AL.1 Y53G8AL.1 3348   III: 3233102-3233200

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y53G8AL.1.1 3233102 3241375 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon82662   99   III: 3233102-3233200 Caenorhabditis elegans
Exon82663   117   III: 3233534-3233650 Caenorhabditis elegans
Exon82664   189   III: 3233718-3233906 Caenorhabditis elegans
Exon82666   216   III: 3234235-3234450 Caenorhabditis elegans
Exon82667   327   III: 3234817-3235143 Caenorhabditis elegans
Exon82668   228   III: 3235737-3235964 Caenorhabditis elegans
Exon82669   84   III: 3236984-3237067 Caenorhabditis elegans
Exon82670   237   III: 3237200-3237436 Caenorhabditis elegans
Exon82671   405   III: 3237801-3238205 Caenorhabditis elegans
Exon82672   1338   III: 3238937-3240274 Caenorhabditis elegans
Exon82673   220   III: 3241156-3241375 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y53G8AL.1.1 3233102 3241375 1

1 Sequence

Length
3460

1 Sequence Ontology Term

Identifier Name Description
transcript