WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y53G8AR.7a.1 Sequence Name  Y53G8AR.7a.1
Length (nt)  1641   Chromosome Location  III: 3282308-3290205
Chromosome . Primary Identifier  III Chromosome Location . Start  3282308
Chromosome Location . End  3290205 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y53G8AR.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021814 mfsd-8.3 Y53G8AR.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y53G8AR.7a Y53G8AR.7a 1560   III: 3282310-3282416

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y53G8AR.7a.1 3282308 3290205 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon82689   109   III: 3282308-3282416 Caenorhabditis elegans
Exon82690   230   III: 3283048-3283277 Caenorhabditis elegans
Exon82691   257   III: 3283942-3284198 Caenorhabditis elegans
Exon82692   172   III: 3285917-3286088 Caenorhabditis elegans
Exon82694   97   III: 3286685-3286781 Caenorhabditis elegans
Exon82696   65   III: 3287211-3287275 Caenorhabditis elegans
Exon82698   73   III: 3287323-3287395 Caenorhabditis elegans
Exon82700   199   III: 3287966-3288164 Caenorhabditis elegans
Exon82702   114   III: 3288210-3288323 Caenorhabditis elegans
Exon82704   114   III: 3288925-3289038 Caenorhabditis elegans
Exon82707   211   III: 3289995-3290205 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y53G8AR.7a.1 3282308 3290205 1

1 Sequence

Length
1641

1 Sequence Ontology Term

Identifier Name Description
transcript