WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F59A2.1a.2 Sequence Name  F59A2.1a.2
Length (nt)  2968   Chromosome Location  III: 3400638-3404479
Chromosome . Primary Identifier  III Chromosome Location . Start  3400638
Chromosome Location . End  3404479 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F59A2.1a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003795 npp-9 F59A2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F59A2.1a F59A2.1a 2583   III: 3400991-3401107

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F59A2.1a.2 3400638 3404479 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon82989   470   III: 3400638-3401107 Caenorhabditis elegans
Exon82993   144   III: 3401166-3401309 Caenorhabditis elegans
Exon82996   898   III: 3401570-3402467 Caenorhabditis elegans
Exon82999   461   III: 3402517-3402977 Caenorhabditis elegans
Exon83003   426   III: 3403154-3403579 Caenorhabditis elegans
Exon83005   426   III: 3403633-3404058 Caenorhabditis elegans
Exon83008   93   III: 3404104-3404196 Caenorhabditis elegans
Exon83011   31   III: 3404246-3404276 Caenorhabditis elegans
Exon83013   19   III: 3404461-3404479 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F59A2.1a.2 3400638 3404479 -1

1 Sequence

Length
2968

1 Sequence Ontology Term

Identifier Name Description
transcript