WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00202321 Gene Name  K01A11.8
Sequence Name  ? K01A11.8 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by alh-4 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 204
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00202321

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K01A11.8 K01A11.8 204   III: 3437226-3437429
 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk962532
gk964281
gk170788
WBVar01408303
WBVar01444958
WBVar01962603
WBVar01444957
gk396819
gk853545

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00202321 3437226 3437429 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_3431486..3437225   5740 III: 3431486-3437225 Caenorhabditis elegans

10 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly increased expression in alh-4(hj221) deletion allele comparing to in N2. N.A. WBPaper00061653:alh-4(hj221)_upregulated
  Single-cell RNA-Seq cell group 6_1 expressed in neuron. scVI 0.6.0 WBPaper00065841:6_1
  Single-cell RNA-Seq cell group 6_2 expressed in neuron. scVI 0.6.0 WBPaper00065841:6_2
  Single-cell RNA-Seq cell group 6_3 expressed in neuron. scVI 0.6.0 WBPaper00065841:6_3
  Single-cell RNA-Seq cell group 86_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:86_0
  Single-cell RNA-Seq cell group 10_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:10_0
  Single-cell RNA-Seq cell group 6_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:6_0
  Single-cell RNA-Seq cell group 14_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:14_0
  Single-cell RNA-Seq cell group 14_1 expressed in neuron. scVI 0.6.0 WBPaper00065841:14_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00202321 3437226 3437429 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
204

1 Sequence Ontology Term