WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M01F1.7.1 Sequence Name  M01F1.7.1
Length (nt)  3540   Chromosome Location  III: 3521133-3529794
Chromosome . Primary Identifier  III Chromosome Location . Start  3521133
Chromosome Location . End  3529794 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M01F1.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010813 pitp-1 M01F1.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M01F1.7 M01F1.7 3105   III: 3521501-3521570

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M01F1.7.1 3521133 3529794 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon83298   438   III: 3521133-3521570 Caenorhabditis elegans
Exon83299   94   III: 3521862-3521955 Caenorhabditis elegans
Exon83300   718   III: 3522011-3522728 Caenorhabditis elegans
Exon83301   322   III: 3523053-3523374 Caenorhabditis elegans
Exon83302   124   III: 3523425-3523548 Caenorhabditis elegans
Exon83303   97   III: 3523596-3523692 Caenorhabditis elegans
Exon83304   210   III: 3523826-3524035 Caenorhabditis elegans
Exon83305   394   III: 3524693-3525086 Caenorhabditis elegans
Exon83306   124   III: 3525132-3525255 Caenorhabditis elegans
Exon83307   250   III: 3525304-3525553 Caenorhabditis elegans
Exon83308   491   III: 3526119-3526609 Caenorhabditis elegans
Exon83309   133   III: 3527713-3527845 Caenorhabditis elegans
Exon83311   145   III: 3529650-3529794 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M01F1.7.1 3521133 3529794 -1

1 Sequence

Length
3540

1 Sequence Ontology Term

Identifier Name Description
transcript