WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48D5.1b.1 Sequence Name  C48D5.1b.1
Length (nt)  1825   Chromosome Location  III: 3573851-3578390
Chromosome . Primary Identifier  III Chromosome Location . Start  3573851
Chromosome Location . End  3578390 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48D5.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003605 nhr-6 C48D5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48D5.1b C48D5.1b 1452   III: 3576353-3576468

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.1b.1 3573851 3578390 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon83354   73   III: 3573851-3573923 Caenorhabditis elegans
Exon83357   103   III: 3574148-3574250 Caenorhabditis elegans
Exon83359   83   III: 3574294-3574376 Caenorhabditis elegans
Exon83362   78   III: 3576192-3576269 Caenorhabditis elegans
Exon83364   152   III: 3576317-3576468 Caenorhabditis elegans
Exon83367   195   III: 3576609-3576803 Caenorhabditis elegans
Exon83370   290   III: 3576870-3577159 Caenorhabditis elegans
Exon83373   158   III: 3577205-3577362 Caenorhabditis elegans
Exon83376   361   III: 3577410-3577770 Caenorhabditis elegans
Exon83379   122   III: 3577848-3577969 Caenorhabditis elegans
Exon83381   210   III: 3578181-3578390 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.1b.1 3573851 3578390 1

1 Sequence

Length
1825

1 Sequence Ontology Term

Identifier Name Description
transcript