WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48D5.1b.2 Sequence Name  C48D5.1b.2
Length (nt)  2062   Chromosome Location  III: 3576060-3578754
Chromosome . Primary Identifier  III Chromosome Location . Start  3576060
Chromosome Location . End  3578754 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48D5.1b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003605 nhr-6 C48D5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48D5.1b C48D5.1b 1452   III: 3576353-3576468

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.1b.2 3576060 3578754 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

8 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon83360   210   III: 3576060-3576269 Caenorhabditis elegans
Exon83365   152   III: 3576317-3576468 Caenorhabditis elegans
Exon83368   195   III: 3576609-3576803 Caenorhabditis elegans
Exon83371   290   III: 3576870-3577159 Caenorhabditis elegans
Exon83374   158   III: 3577205-3577362 Caenorhabditis elegans
Exon83377   361   III: 3577410-3577770 Caenorhabditis elegans
Exon83380   122   III: 3577848-3577969 Caenorhabditis elegans
Exon83382   574   III: 3578181-3578754 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.1b.2 3576060 3578754 1

1 Sequence

Length
2062

1 Sequence Ontology Term

Identifier Name Description
transcript