WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48D5.1a.1 Sequence Name  C48D5.1a.1
Length (nt)  2359   Chromosome Location  III: 3573581-3578771
Chromosome . Primary Identifier  III Chromosome Location . Start  3573581
Chromosome Location . End  3578771 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48D5.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003605 nhr-6 C48D5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48D5.1a C48D5.1a 1860   III: 3573699-3573740

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.1a.1 3573581 3578771 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon83389   160   III: 3573581-3573740 Caenorhabditis elegans
Exon83392   66   III: 3573858-3573923 Caenorhabditis elegans
Exon83393   103   III: 3574148-3574250 Caenorhabditis elegans
Exon83395   83   III: 3574294-3574376 Caenorhabditis elegans
Exon83398   78   III: 3576192-3576269 Caenorhabditis elegans
Exon83400   152   III: 3576317-3576468 Caenorhabditis elegans
Exon83403   195   III: 3576609-3576803 Caenorhabditis elegans
Exon83406   290   III: 3576870-3577159 Caenorhabditis elegans
Exon83409   158   III: 3577205-3577362 Caenorhabditis elegans
Exon83412   361   III: 3577410-3577770 Caenorhabditis elegans
Exon83415   122   III: 3577848-3577969 Caenorhabditis elegans
Exon83420   591   III: 3578181-3578771 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.1a.1 3573581 3578771 1

1 Sequence

Length
2359

1 Sequence Ontology Term

Identifier Name Description
transcript