WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48D5.2c.1 Sequence Name  C48D5.2c.1
Length (nt)  1773   Chromosome Location  III: 3595222-3611564
Chromosome . Primary Identifier  III Chromosome Location . Start  3595222
Chromosome Location . End  3611564 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48D5.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004213 ptp-1 C48D5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48D5.2c C48D5.2c 1770   III: 3595225-3595253

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.2c.1 3595222 3611564 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon83400   32   III: 3595222-3595253 Caenorhabditis elegans
Exon83404   103   III: 3604815-3604917 Caenorhabditis elegans
Exon83408   184   III: 3607049-3607232 Caenorhabditis elegans
Exon83411   188   III: 3607558-3607745 Caenorhabditis elegans
Exon83414   301   III: 3608124-3608424 Caenorhabditis elegans
Exon83417   229   III: 3608994-3609222 Caenorhabditis elegans
Exon83420   88   III: 3609685-3609772 Caenorhabditis elegans
Exon83423   276   III: 3609824-3610099 Caenorhabditis elegans
Exon83426   285   III: 3610561-3610845 Caenorhabditis elegans
Exon83427   87   III: 3611478-3611564 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.2c.1 3595222 3611564 1

1 Sequence

Length
1773

1 Sequence Ontology Term

Identifier Name Description
transcript