WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48D5.2a.1 Sequence Name  C48D5.2a.1
Length (nt)  3536   Chromosome Location  III: 3590722-3611971
Chromosome . Primary Identifier  III Chromosome Location . Start  3590722
Chromosome Location . End  3611971 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48D5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004213 ptp-1 C48D5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48D5.2a C48D5.2a 3081   III: 3590770-3590907

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.2a.1 3590722 3611971 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon83429   186   III: 3590722-3590907 Caenorhabditis elegans
Exon83430   117   III: 3591624-3591740 Caenorhabditis elegans
Exon83431   217   III: 3591785-3592001 Caenorhabditis elegans
Exon83432   127   III: 3592397-3592523 Caenorhabditis elegans
Exon83433   247   III: 3592604-3592850 Caenorhabditis elegans
Exon83434   227   III: 3593165-3593391 Caenorhabditis elegans
Exon83435   114   III: 3594210-3594323 Caenorhabditis elegans
Exon83436   153   III: 3594440-3594592 Caenorhabditis elegans
Exon83439   103   III: 3604815-3604917 Caenorhabditis elegans
Exon83443   184   III: 3607049-3607232 Caenorhabditis elegans
Exon83446   188   III: 3607558-3607745 Caenorhabditis elegans
Exon83449   301   III: 3608124-3608424 Caenorhabditis elegans
Exon83452   229   III: 3608994-3609222 Caenorhabditis elegans
Exon83455   88   III: 3609685-3609772 Caenorhabditis elegans
Exon83458   276   III: 3609824-3610099 Caenorhabditis elegans
Exon83461   285   III: 3610561-3610845 Caenorhabditis elegans
Exon83465   494   III: 3611478-3611971 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.2a.1 3590722 3611971 1

1 Sequence

Length
3536

1 Sequence Ontology Term

Identifier Name Description
transcript