WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48D5.2b.1 Sequence Name  C48D5.2b.1
Length (nt)  2347   Chromosome Location  III: 3599136-3611971
Chromosome . Primary Identifier  III Chromosome Location . Start  3599136
Chromosome Location . End  3611971 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48D5.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004213 ptp-1 C48D5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48D5.2b C48D5.2b 1875   III: 3599201-3599334

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.2b.1 3599136 3611971 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon83438   199   III: 3599136-3599334 Caenorhabditis elegans
Exon83440   103   III: 3604815-3604917 Caenorhabditis elegans
Exon83444   184   III: 3607049-3607232 Caenorhabditis elegans
Exon83447   188   III: 3607558-3607745 Caenorhabditis elegans
Exon83450   301   III: 3608124-3608424 Caenorhabditis elegans
Exon83453   229   III: 3608994-3609222 Caenorhabditis elegans
Exon83456   88   III: 3609685-3609772 Caenorhabditis elegans
Exon83459   276   III: 3609824-3610099 Caenorhabditis elegans
Exon83462   285   III: 3610561-3610845 Caenorhabditis elegans
Exon83466   494   III: 3611478-3611971 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.2b.1 3599136 3611971 1

1 Sequence

Length
2347

1 Sequence Ontology Term

Identifier Name Description
transcript