WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R13G10.1.1 Sequence Name  R13G10.1.1
Length (nt)  5303   Chromosome Location  III: 3813018-3819679
Chromosome . Primary Identifier  III Chromosome Location . Start  3813018
Chromosome Location . End  3819679 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R13G10.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001086 dpy-27 R13G10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13G10.1 R13G10.1 4410   III: 3813909-3814171

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R13G10.1.1 3813018 3819679 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon83820   1154   III: 3813018-3814171 Caenorhabditis elegans
Exon83821   541   III: 3814278-3814818 Caenorhabditis elegans
Exon83822   349   III: 3814923-3815271 Caenorhabditis elegans
Exon83823   278   III: 3815339-3815616 Caenorhabditis elegans
Exon83824   438   III: 3815936-3816373 Caenorhabditis elegans
Exon83825   451   III: 3816505-3816955 Caenorhabditis elegans
Exon83826   209   III: 3817004-3817212 Caenorhabditis elegans
Exon83827   238   III: 3817419-3817656 Caenorhabditis elegans
Exon83828   756   III: 3817720-3818475 Caenorhabditis elegans
Exon83829   359   III: 3818660-3819018 Caenorhabditis elegans
Exon83830   102   III: 3819101-3819202 Caenorhabditis elegans
Exon83831   428   III: 3819252-3819679 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R13G10.1.1 3813018 3819679 -1

1 Sequence

Length
5303

1 Sequence Ontology Term

Identifier Name Description
transcript