WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C36A4.8a.1 Sequence Name  C36A4.8a.1
Length (nt)  1955   Chromosome Location  III: 3853113-3862958
Chromosome . Primary Identifier  III Chromosome Location . Start  3853113
Chromosome Location . End  3862958 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C36A4.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000264 brc-1 C36A4.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C36A4.8a C36A4.8a 1830   III: 3853238-3853486

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C36A4.8a.1 3853113 3862958 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon83958   374   III: 3853113-3853486 Caenorhabditis elegans
Exon83961   174   III: 3854182-3854355 Caenorhabditis elegans
Exon83966   119   III: 3858318-3858436 Caenorhabditis elegans
Exon83968   100   III: 3858946-3859045 Caenorhabditis elegans
Exon83970   129   III: 3859093-3859221 Caenorhabditis elegans
Exon83973   339   III: 3861280-3861618 Caenorhabditis elegans
Exon83975   74   III: 3861681-3861754 Caenorhabditis elegans
Exon83977   229   III: 3861804-3862032 Caenorhabditis elegans
Exon83979   346   III: 3862489-3862834 Caenorhabditis elegans
Exon83981   71   III: 3862888-3862958 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C36A4.8a.1 3853113 3862958 -1

1 Sequence

Length
1955

1 Sequence Ontology Term

Identifier Name Description
transcript