WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F13B10.1a.2 Sequence Name  F13B10.1a.2
Length (nt)  3498   Chromosome Location  III: 3869590-3891460
Chromosome . Primary Identifier  III Chromosome Location . Start  3869590
Chromosome Location . End  3891460 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F13B10.1a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006575 tir-1 F13B10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F13B10.1a F13B10.1a 2793   III: 3870183-3870277

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1a.2 3869590 3891460 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon84046   688   III: 3869590-3870277 Caenorhabditis elegans
Exon84058   118   III: 3870326-3870443 Caenorhabditis elegans
Exon84072   1035   III: 3870600-3871634 Caenorhabditis elegans
Exon84086   115   III: 3880116-3880230 Caenorhabditis elegans
Exon84096   378   III: 3880279-3880656 Caenorhabditis elegans
Exon84106   119   III: 3880957-3881075 Caenorhabditis elegans
Exon84116   231   III: 3881123-3881353 Caenorhabditis elegans
Exon84126   375   III: 3881631-3882005 Caenorhabditis elegans
Exon84136   241   III: 3882307-3882547 Caenorhabditis elegans
Exon84151   107   III: 3890925-3891031 Caenorhabditis elegans
Exon84155   91   III: 3891370-3891460 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1a.2 3869590 3891460 -1

1 Sequence

Length
3498

1 Sequence Ontology Term

Identifier Name Description
transcript