WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F13B10.1f.1 Sequence Name  F13B10.1f.1
Length (nt)  2955   Chromosome Location  III: 3870183-3887608
Chromosome . Primary Identifier  III Chromosome Location . Start  3870183
Chromosome Location . End  3887608 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F13B10.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006575 tir-1 F13B10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F13B10.1f F13B10.1f 2955   III: 3870183-3870277

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1f.1 3870183 3887608 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon84055   95   III: 3870183-3870277 Caenorhabditis elegans
Exon84067   118   III: 3870326-3870443 Caenorhabditis elegans
Exon84080   1035   III: 3870600-3871634 Caenorhabditis elegans
Exon84093   115   III: 3880116-3880230 Caenorhabditis elegans
Exon84103   378   III: 3880279-3880656 Caenorhabditis elegans
Exon84113   119   III: 3880957-3881075 Caenorhabditis elegans
Exon84123   231   III: 3881123-3881353 Caenorhabditis elegans
Exon84132   375   III: 3881631-3882005 Caenorhabditis elegans
Exon84142   241   III: 3882307-3882547 Caenorhabditis elegans
Exon84146   248   III: 3887361-3887608 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1f.1 3870183 3887608 -1

1 Sequence

Length
2955

1 Sequence Ontology Term

Identifier Name Description
transcript