WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C36E8.3.1 Sequence Name  C36E8.3.1
Length (nt)  1877   Chromosome Location  III: 4006142-4009960
Chromosome . Primary Identifier  III Chromosome Location . Start  4006142
Chromosome Location . End  4009960 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C36E8.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007982 pxd-1 C36E8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C36E8.3 C36E8.3 1497   III: 4006175-4006241

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C36E8.3.1 4006142 4009960 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon84289   100   III: 4006142-4006241 Caenorhabditis elegans
Exon84290   236   III: 4006554-4006789 Caenorhabditis elegans
Exon84291   153   III: 4007263-4007415 Caenorhabditis elegans
Exon84292   162   III: 4007842-4008003 Caenorhabditis elegans
Exon84293   85   III: 4008062-4008146 Caenorhabditis elegans
Exon84294   62   III: 4008202-4008263 Caenorhabditis elegans
Exon84295   193   III: 4008320-4008512 Caenorhabditis elegans
Exon84296   473   III: 4008663-4009135 Caenorhabditis elegans
Exon84297   413   III: 4009548-4009960 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C36E8.3.1 4006142 4009960 1

1 Sequence

Length
1877

1 Sequence Ontology Term

Identifier Name Description
transcript