WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C12.1.1 Sequence Name  T02C12.1.1
Length (nt)  3306   Chromosome Location  III: 4029115-4036834
Chromosome . Primary Identifier  III Chromosome Location . Start  4029115
Chromosome Location . End  4036834 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C12.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002038 hum-5 T02C12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C12.1 T02C12.1 3054   III: 4029366-4029543

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T02C12.1.1 4029115 4036834 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon84332   429   III: 4029115-4029543 Caenorhabditis elegans
Exon84333   146   III: 4029639-4029784 Caenorhabditis elegans
Exon84335   225   III: 4030235-4030459 Caenorhabditis elegans
Exon84337   247   III: 4030507-4030753 Caenorhabditis elegans
Exon84339   122   III: 4031092-4031213 Caenorhabditis elegans
Exon84341   297   III: 4031342-4031638 Caenorhabditis elegans
Exon84343   214   III: 4031901-4032114 Caenorhabditis elegans
Exon84345   293   III: 4032159-4032451 Caenorhabditis elegans
Exon84347   136   III: 4032496-4032631 Caenorhabditis elegans
Exon84349   140   III: 4032674-4032813 Caenorhabditis elegans
Exon84351   246   III: 4033003-4033248 Caenorhabditis elegans
Exon84353   90   III: 4033297-4033386 Caenorhabditis elegans
Exon84355   150   III: 4033771-4033920 Caenorhabditis elegans
Exon84357   363   III: 4033995-4034357 Caenorhabditis elegans
Exon84359   106   III: 4034648-4034753 Caenorhabditis elegans
Exon84362   102   III: 4036733-4036834 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T02C12.1.1 4029115 4036834 -1

1 Sequence

Length
3306

1 Sequence Ontology Term

Identifier Name Description
transcript