WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16C10.12a.1 Sequence Name  C16C10.12a.1
Length (nt)  1921   Chromosome Location  III: 4147425-4151598
Chromosome . Primary Identifier  III Chromosome Location . Start  4147425
Chromosome Location . End  4151598 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16C10.12a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007631 wht-3 C16C10.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16C10.12a C16C10.12a 1845   III: 4147454-4147594

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16C10.12a.1 4147425 4151598 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon84767   170   III: 4147425-4147594 Caenorhabditis elegans
Exon84771   67   III: 4147640-4147706 Caenorhabditis elegans
Exon84775   119   III: 4147780-4147898 Caenorhabditis elegans
Exon84779   184   III: 4147945-4148128 Caenorhabditis elegans
Exon84783   273   III: 4148540-4148812 Caenorhabditis elegans
Exon84787   251   III: 4149406-4149656 Caenorhabditis elegans
Exon84791   384   III: 4149911-4150294 Caenorhabditis elegans
Exon84797   187   III: 4150625-4150811 Caenorhabditis elegans
Exon84801   105   III: 4150870-4150974 Caenorhabditis elegans
Exon84803   47   III: 4151239-4151285 Caenorhabditis elegans
Exon84806   134   III: 4151465-4151598 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16C10.12a.1 4147425 4151598 -1

1 Sequence

Length
1921

1 Sequence Ontology Term

Identifier Name Description
transcript