WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08A11.1g.1 Sequence Name  T08A11.1g.1
Length (nt)  5765   Chromosome Location  III: 4248152-4263144
Chromosome . Primary Identifier  III Chromosome Location . Start  4248152
Chromosome Location . End  4263144 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08A11.1g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011604 depd-5 T08A11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08A11.1g T08A11.1g 5151   III: 4248670-4248820

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08A11.1g.1 4248152 4263144 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon85036   669   III: 4248152-4248820 Caenorhabditis elegans
Exon85046   551   III: 4249533-4250083 Caenorhabditis elegans
Exon85054   263   III: 4250748-4251010 Caenorhabditis elegans
Exon85062   90   III: 4251371-4251460 Caenorhabditis elegans
Exon85070   517   III: 4251856-4252372 Caenorhabditis elegans
Exon85078   402   III: 4252612-4253013 Caenorhabditis elegans
Exon85087   235   III: 4253292-4253526 Caenorhabditis elegans
Exon85095   355   III: 4253576-4253930 Caenorhabditis elegans
Exon85100   297   III: 4257711-4258007 Caenorhabditis elegans
Exon85111   82   III: 4258057-4258138 Caenorhabditis elegans
Exon85119   873   III: 4258192-4259064 Caenorhabditis elegans
Exon85127   183   III: 4259572-4259754 Caenorhabditis elegans
Exon85135   138   III: 4259802-4259939 Caenorhabditis elegans
Exon85143   396   III: 4260882-4261277 Caenorhabditis elegans
Exon85151   108   III: 4261526-4261633 Caenorhabditis elegans
Exon85159   336   III: 4261680-4262015 Caenorhabditis elegans
Exon85166   270   III: 4262875-4263144 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08A11.1g.1 4248152 4263144 -1

1 Sequence

Length
5765

1 Sequence Ontology Term

Identifier Name Description
transcript