WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08A11.1b.1 Sequence Name  T08A11.1b.1
Length (nt)  5759   Chromosome Location  III: 4248152-4263144
Chromosome . Primary Identifier  III Chromosome Location . Start  4248152
Chromosome Location . End  4263144 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08A11.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011604 depd-5 T08A11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08A11.1b T08A11.1b 5145   III: 4248670-4248820

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08A11.1b.1 4248152 4263144 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon85034   669   III: 4248152-4248820 Caenorhabditis elegans
Exon85041   551   III: 4249533-4250083 Caenorhabditis elegans
Exon85049   257   III: 4250748-4251004 Caenorhabditis elegans
Exon85057   90   III: 4251371-4251460 Caenorhabditis elegans
Exon85065   517   III: 4251856-4252372 Caenorhabditis elegans
Exon85073   402   III: 4252612-4253013 Caenorhabditis elegans
Exon85082   235   III: 4253292-4253526 Caenorhabditis elegans
Exon85090   349   III: 4253576-4253924 Caenorhabditis elegans
Exon85101   303   III: 4257711-4258013 Caenorhabditis elegans
Exon85106   82   III: 4258057-4258138 Caenorhabditis elegans
Exon85114   873   III: 4258192-4259064 Caenorhabditis elegans
Exon85122   183   III: 4259572-4259754 Caenorhabditis elegans
Exon85130   138   III: 4259802-4259939 Caenorhabditis elegans
Exon85138   396   III: 4260882-4261277 Caenorhabditis elegans
Exon85146   108   III: 4261526-4261633 Caenorhabditis elegans
Exon85154   336   III: 4261680-4262015 Caenorhabditis elegans
Exon85164   270   III: 4262875-4263144 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08A11.1b.1 4248152 4263144 -1

1 Sequence

Length
5759

1 Sequence Ontology Term

Identifier Name Description
transcript