WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08A11.1a.1 Sequence Name  T08A11.1a.1
Length (nt)  5757   Chromosome Location  III: 4248152-4263148
Chromosome . Primary Identifier  III Chromosome Location . Start  4248152
Chromosome Location . End  4263148 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08A11.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011604 depd-5 T08A11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08A11.1a T08A11.1a 5139   III: 4248670-4248820

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08A11.1a.1 4248152 4263148 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon85038   669   III: 4248152-4248820 Caenorhabditis elegans
Exon85040   551   III: 4249533-4250083 Caenorhabditis elegans
Exon85048   257   III: 4250748-4251004 Caenorhabditis elegans
Exon85056   90   III: 4251371-4251460 Caenorhabditis elegans
Exon85064   517   III: 4251856-4252372 Caenorhabditis elegans
Exon85072   402   III: 4252612-4253013 Caenorhabditis elegans
Exon85081   235   III: 4253292-4253526 Caenorhabditis elegans
Exon85089   349   III: 4253576-4253924 Caenorhabditis elegans
Exon85097   297   III: 4257711-4258007 Caenorhabditis elegans
Exon85105   82   III: 4258057-4258138 Caenorhabditis elegans
Exon85113   873   III: 4258192-4259064 Caenorhabditis elegans
Exon85121   183   III: 4259572-4259754 Caenorhabditis elegans
Exon85129   138   III: 4259802-4259939 Caenorhabditis elegans
Exon85137   396   III: 4260882-4261277 Caenorhabditis elegans
Exon85145   108   III: 4261526-4261633 Caenorhabditis elegans
Exon85153   336   III: 4261680-4262015 Caenorhabditis elegans
Exon85168   274   III: 4262875-4263148 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08A11.1a.1 4248152 4263148 -1

1 Sequence

Length
5757

1 Sequence Ontology Term

Identifier Name Description
transcript