WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08A11.1e.1 Sequence Name  T08A11.1e.1
Length (nt)  5663   Chromosome Location  III: 4248152-4263048
Chromosome . Primary Identifier  III Chromosome Location . Start  4248152
Chromosome Location . End  4263048 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08A11.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011604 depd-5 T08A11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08A11.1e T08A11.1e 5145   III: 4248670-4248820

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08A11.1e.1 4248152 4263048 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon85035   669   III: 4248152-4248820 Caenorhabditis elegans
Exon85044   551   III: 4249533-4250083 Caenorhabditis elegans
Exon85052   263   III: 4250748-4251010 Caenorhabditis elegans
Exon85060   90   III: 4251371-4251460 Caenorhabditis elegans
Exon85068   517   III: 4251856-4252372 Caenorhabditis elegans
Exon85076   402   III: 4252612-4253013 Caenorhabditis elegans
Exon85085   235   III: 4253292-4253526 Caenorhabditis elegans
Exon85091   349   III: 4253576-4253924 Caenorhabditis elegans
Exon85099   297   III: 4257711-4258007 Caenorhabditis elegans
Exon85109   82   III: 4258057-4258138 Caenorhabditis elegans
Exon85117   873   III: 4258192-4259064 Caenorhabditis elegans
Exon85125   183   III: 4259572-4259754 Caenorhabditis elegans
Exon85133   138   III: 4259802-4259939 Caenorhabditis elegans
Exon85141   396   III: 4260882-4261277 Caenorhabditis elegans
Exon85149   108   III: 4261526-4261633 Caenorhabditis elegans
Exon85157   336   III: 4261680-4262015 Caenorhabditis elegans
Exon85162   174   III: 4262875-4263048 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08A11.1e.1 4248152 4263048 -1

1 Sequence

Length
5663

1 Sequence Ontology Term

Identifier Name Description
transcript