WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08A11.2.1 Sequence Name  T08A11.2.1
Length (nt)  4269   Chromosome Location  III: 4263786-4269270
Chromosome . Primary Identifier  III Chromosome Location . Start  4263786
Chromosome Location . End  4269270 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08A11.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011605 sftb-1 T08A11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08A11.2 T08A11.2 3969   III: 4264082-4264195

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08A11.2.1 4263786 4269270 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon85169   410   III: 4263786-4264195 Caenorhabditis elegans
Exon85170   66   III: 4264583-4264648 Caenorhabditis elegans
Exon85171   429   III: 4264698-4265126 Caenorhabditis elegans
Exon85172   936   III: 4265174-4266109 Caenorhabditis elegans
Exon85173   270   III: 4266169-4266438 Caenorhabditis elegans
Exon85174   235   III: 4266489-4266723 Caenorhabditis elegans
Exon85175   88   III: 4267128-4267215 Caenorhabditis elegans
Exon85176   744   III: 4267266-4268009 Caenorhabditis elegans
Exon85177   663   III: 4268062-4268724 Caenorhabditis elegans
Exon85178   280   III: 4268771-4269050 Caenorhabditis elegans
Exon85179   148   III: 4269123-4269270 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08A11.2.1 4263786 4269270 -1

1 Sequence

Length
4269

1 Sequence Ontology Term

Identifier Name Description
transcript