WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H38K22.5a.1 Sequence Name  H38K22.5a.1
Length (nt)  2422   Chromosome Location  III: 4324280-4327987
Chromosome . Primary Identifier  III Chromosome Location . Start  4324280
Chromosome Location . End  4327987 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H38K22.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001631 gly-6 H38K22.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H38K22.5a H38K22.5a 1857   III: 4324799-4324843

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H38K22.5a.1 4324280 4327987 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon85421   564   III: 4324280-4324843 Caenorhabditis elegans
Exon85426   123   III: 4325039-4325161 Caenorhabditis elegans
Exon85432   150   III: 4325206-4325355 Caenorhabditis elegans
Exon85441   108   III: 4325535-4325642 Caenorhabditis elegans
Exon85445   143   III: 4325746-4325888 Caenorhabditis elegans
Exon85450   184   III: 4326071-4326254 Caenorhabditis elegans
Exon85455   500   III: 4326299-4326798 Caenorhabditis elegans
Exon85460   144   III: 4326982-4327125 Caenorhabditis elegans
Exon85465   268   III: 4327302-4327569 Caenorhabditis elegans
Exon85470   66   III: 4327703-4327768 Caenorhabditis elegans
Exon85475   172   III: 4327816-4327987 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H38K22.5a.1 4324280 4327987 -1

1 Sequence

Length
2422

1 Sequence Ontology Term

Identifier Name Description
transcript