WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07E5.8a.1 Sequence Name  R07E5.8a.1
Length (nt)  2241   Chromosome Location  III: 4419848-4423347
Chromosome . Primary Identifier  III Chromosome Location . Start  4419848
Chromosome Location . End  4423347 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07E5.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000520 cku-80 R07E5.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07E5.8a R07E5.8a 2142   III: 4419856-4419996

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07E5.8a.1 4419848 4423347 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon85753   149   III: 4419848-4419996 Caenorhabditis elegans
Exon85755   196   III: 4420044-4420239 Caenorhabditis elegans
Exon85757   178   III: 4420289-4420466 Caenorhabditis elegans
Exon85759   84   III: 4420513-4420596 Caenorhabditis elegans
Exon85761   73   III: 4420919-4420991 Caenorhabditis elegans
Exon85763   235   III: 4421042-4421276 Caenorhabditis elegans
Exon85765   131   III: 4421322-4421452 Caenorhabditis elegans
Exon85767   316   III: 4421898-4422213 Caenorhabditis elegans
Exon85770   61   III: 4422266-4422326 Caenorhabditis elegans
Exon85773   86   III: 4422372-4422457 Caenorhabditis elegans
Exon85777   419   III: 4422511-4422929 Caenorhabditis elegans
Exon85781   133   III: 4422982-4423114 Caenorhabditis elegans
Exon85787   180   III: 4423168-4423347 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07E5.8a.1 4419848 4423347 1

1 Sequence

Length
2241

1 Sequence Ontology Term

Identifier Name Description
transcript