WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07E5.8a.2 Sequence Name  R07E5.8a.2
Length (nt)  2263   Chromosome Location  III: 4419854-4423375
Chromosome . Primary Identifier  III Chromosome Location . Start  4419854
Chromosome Location . End  4423375 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07E5.8a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000520 cku-80 R07E5.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07E5.8a R07E5.8a 2142   III: 4419856-4419996

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07E5.8a.2 4419854 4423375 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon85761   143   III: 4419854-4419996 Caenorhabditis elegans
Exon85763   196   III: 4420044-4420239 Caenorhabditis elegans
Exon85765   178   III: 4420289-4420466 Caenorhabditis elegans
Exon85767   84   III: 4420513-4420596 Caenorhabditis elegans
Exon85769   73   III: 4420919-4420991 Caenorhabditis elegans
Exon85771   235   III: 4421042-4421276 Caenorhabditis elegans
Exon85773   131   III: 4421322-4421452 Caenorhabditis elegans
Exon85775   316   III: 4421898-4422213 Caenorhabditis elegans
Exon85778   61   III: 4422266-4422326 Caenorhabditis elegans
Exon85781   86   III: 4422372-4422457 Caenorhabditis elegans
Exon85785   419   III: 4422511-4422929 Caenorhabditis elegans
Exon85789   133   III: 4422982-4423114 Caenorhabditis elegans
Exon85795   208   III: 4423168-4423375 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07E5.8a.2 4419854 4423375 1

1 Sequence

Length
2263

1 Sequence Ontology Term

Identifier Name Description
transcript