WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C28A5.6.1 Sequence Name  C28A5.6.1
Length (nt)  3286   Chromosome Location  III: 4423707-4429502
Chromosome . Primary Identifier  III Chromosome Location . Start  4423707
Chromosome Location . End  4429502 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C28A5.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007791 C28A5.6 C28A5.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C28A5.6 C28A5.6 3195   III: 4423795-4423994

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C28A5.6.1 4423707 4429502 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon85789   288   III: 4423707-4423994 Caenorhabditis elegans
Exon85790   328   III: 4424041-4424368 Caenorhabditis elegans
Exon85791   566   III: 4424662-4425227 Caenorhabditis elegans
Exon85792   99   III: 4425277-4425375 Caenorhabditis elegans
Exon85793   91   III: 4425423-4425513 Caenorhabditis elegans
Exon85794   115   III: 4425558-4425672 Caenorhabditis elegans
Exon85795   162   III: 4426073-4426234 Caenorhabditis elegans
Exon85796   69   III: 4426285-4426353 Caenorhabditis elegans
Exon85797   95   III: 4426399-4426493 Caenorhabditis elegans
Exon85798   129   III: 4426545-4426673 Caenorhabditis elegans
Exon85799   111   III: 4426721-4426831 Caenorhabditis elegans
Exon85802   359   III: 4427675-4428033 Caenorhabditis elegans
Exon85803   485   III: 4428423-4428907 Caenorhabditis elegans
Exon85806   320   III: 4429063-4429382 Caenorhabditis elegans
Exon85807   69   III: 4429434-4429502 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C28A5.6.1 4423707 4429502 -1

1 Sequence

Length
3286

1 Sequence Ontology Term

Identifier Name Description
transcript